Vibrational circular-dichroism spectroscopy of homologous cyclic peptides designed to fold into β helices of opposite chirality

Cyclic β-helical peptides have been developed as model structured biomolecules for examining peptide adsorption and conformation on surfaces. As a key prerequisite to circular-dichroism (CD) analysis of these model peptides on surfaces, their conformations and the corresponding vibrational spectra in the 1400-1800 cm?1 range were analyzed by vibrational circular-dichroism (VCD) spectroscopy in solution. The two model peptides ("β Leu and β Val") were examined in chloroform, where they each fold into a homogeneous well-defined antiparallel double-stranded β-helical species, as determined previously by NMR and electronic CD spectroscopy. Because the β-helical conformations of β Leu and β Val are well characterized, the VCD spectra of these peptides can be unambiguously correlated with their structures. In addition, these two β-helical peptides differ from one another in two key respects that make them uniquely advantageous for CD analysis--first, while their backbone conformations are topologically similar, β Leu and β Val form helices of opposite chiralities; second, the two peptides differ in their sequences, i.e., composition of the side chains attached to the backbone. The observed VCD spectra for β Leu and β Val are roughly mirror images of each other, indicating that the VCD features are dominated by the chirality and conformation of the peptide backbone rather than by the peptide sequence. Accordingly, spectra similarly characteristic of peptide secondary structure can be expected for peptides designed to be structural analogs of β Leu and β Val while incorporating a variety of side chains for studies of surface adsorption from organic and aqueous solvents.     

木材表面声发射信号源的三角形定位方法

为了确定木材表面声发射源的发生位置,首先采用高速采集设备设计了基于Lab VIEW的多通道声发射信号采集平台,并采用小波分析方法从原始声发射信号中析取有用信号;然后根据信号传播的时延差确定声发射信号在木材表面的平均传播速率;最后依据基于时差的三角形几何定位原理,提出木材表面声发射信号源定位方法,并通过铅芯模拟声发射源的测试试验加以验证。结果表明该方法能够以较高的精度确定木材表面声发射信号源位置。     

Dietary profile of n‐3 series LC‐PUFAs in rainbow trout under regular stripping condition: Semen production and quality,hepato‐somatic index,haemato‐immunologic values,oxidative stress and fatty acid composition of liver,muscle and semen

In this study, the semen production and quality, hepato‐somatic index, haemato‐immunologic values, oxidative stress and the fatty acid contents in liver, muscle and semen of rainbow trout fed diets supplemented n‐3 series long‐chain polyunsaturated fatty acids (LC‐PUFAs) under regular stripping condition were investigated. For this aim, three diets (Control, D1 and D2) were prepared. These diets were contained n‐3 LC‐PUFAs (as a percentage of dietary total fatty acid) at 3.14%, 7.84% and 13.63% respectively. Experimental fish were fed with the control and test diets. The highest hepato‐somatic index, spermatologic (semen pH and volume, sperm motility and density), haematologic (haematocrit value, haemoglobin, erythrocyte count, corpuscular volume, haemoglobin and its concentration in corpuscular), immunologic (nitroblue tetrazolium activity, leucocyte count, phagocytic index, protein and immunoglobulin [IgM] in total plasma) and antioxidants (reduced glutathione, catalase, glutathione peroxidase and superoxide dismutase) values were found in fish fed the D2, D1 and control diets respectively (p < 0.01). Increase in the dietary n‐3 LC‐PUFAs was not significantly (p > 0.01) increased the oxidative stress (malondialdehyde) in fish. The results indicated that the n‐3 LC‐PUFAs at 13.63% level of total fatty acid in the diet could increase the semen production and quality, hepato‐somatic index, haematologic and immunologic values, and the n‐3 LC‐PUFA contents in liver, muscle and semen of rainbow trout broodstock under regular stripping condition.     

Assessing the situation of non-forest private woodlands: The Turkish case

This paper examines the situation of private woodlands in Turkey, which are referred to as ‘non-forest private woodlands’ (NFPWs). The questions addressed by this study are ‘Why are NFPWs not defined as forest?’, ‘Is the exclusion of NFPWs from forests reasonable?’ and ‘What are the consequences of excluding NFPWs from the forest regime?’. It is found that the criteria used to define a forest in Turkey, and hence to exclude NFPWs from forests, do not have a rational basis. Moreover, the threshold level of area, the most decisive criterion, is far beyond comparable international values and cannot be explained by country peculiarities. Also, NFPWs are more likely to be granted tree cutting approval if they have some type of official cadastre or if they harvest trees for domestic use. Commercial-use NFPWs make tree cuttings in higher quantities than domestic harvesters. NFPWs in general can be perceived as fuelwood harvesters as opposed to industrial wood suppliers. NFPWs with forest or land cadastre tend to harvest at higher levels compared to those without a cadastral survey. In the 8-year period 1993 and 2000, approximately 2.5 M m³ of wood was harvested on NFPWs across Turkey. The annual wood production on NFPWs throughout the country decreased drastically during that period, from about 700,000 m³ down to about 150,000 m³. This may be an alarming sign for environmental and socio-economic sustainability involving these lands. Forest management of these lands can be improved if the forestry administration authority implements planned environment-related regulative criteria as well as sound channels of communication, designed to lead the landowners towards best ‘forest’ management practices and hence to guarantee the sustainability of the communities and the natural resource base of the country.     

Clinical assessment of epidural analgesia induced by xylazine-lidocaine combination accompanied by xylazine sedation in calves

: The aim of the present study was to investigate whether epidural administration of a xylazine-lidocaine combination accompanied by xylazine sedation would provide satisfactory analgesia for some surgical procedures on 10 calves admitted to the Department of Veterinary Surgery, University of Kafkas with perineal urolithiasis (n:2), rectovaginal fistula (n:1), atresia ani (n:2), omphalophlebitis (n:2), omphaloarteritis (n:1) and umbilical hernia (n:2).Following intramuscular injection of xylazine at a dose of 0.05 mg/kg for sedation, xylazine-lidocaine combination (0.2 mg/kg lidocaine + 0.02 mg/kg xylazine + 5 ml 0.9% NaCl) was administrated into the lumbosacral (L6-S1), sacrococcygeal (S5-Co1) or intercoccygeal (Co1-Co2) space. Heart rate, respiratory rate and rectal temperature were recorded prior to and during analgesia at 5, 10, 15, 30 and 60 minutes. Furthermore, depth and duration of analgesia were evaluated during surgical intervention.The study revealed that the combination of epidural xylazine-lidocaine with xylazine sedation was highly satisfactory for surgery of the lower urinary tract and the perineal region, but it was less so for surgery of the umbilical area.     

Note: Tachinid parasitoids (Diptera: Tachinidae) of<Emphasis Type="Italic">Mythimna (Acantholeucania) loreyi</Emphasis> in the southeast Anatolian region of Turkey

The loreyi leaf worm,Mythimna (Acantholeucania) loreyi (Duponchel) (Lepidoptera: Noctuidae), is a serious pest of gramineous crops and reduces yields in maize plantations. This study was undertaken to determine the tachinid parasitoid complex ofM. loreyi in the southeast Anatolian region of Turkey. Four tachinid species were found:Pseudogonia rufifrons (Wiedemann),Exorista larvarum (Linnaeus),Drino imberbis (Wiedemann) andLinnaemya neavei Curran were reared from field-collectedM. loreyi larvae. Of the four tachinid speciesM. loreyi is a new host record forE. larvarum andD. imberbis. L. neavei was recorded for the first time in Turkey and was the most frequently encountered parasitoid in this study. Total parasitism level was 7.1% in 2003 and 15.5% in 2004. http://www.phytoparasitica.org posting Jan. 16, 2007.     

Effects of different nutrient solution formulations on morphological and biochemical characteristics of nursery fig trees grown in substrate culture

This research was carried out to determine the effects of different nutrient solution formulations on the growth of nursery fig trees in substrate culture, which is one of the soil-less culture techniques. The hardwood cuttings of Ficus carica L. cv. “Sar?lop” (Calimyrna) were planted into pots filled with 13 L of perlite. Five different nutrient solution formulations were tested on the quality and growth progress of nursery fig trees. The trials were conducted in two different growing conditions, namely, high-tunnel and open-field conditions in substrate culture. To observe the effect of different nutrient solution formulations on nursery fig trees, some morphological and biochemical characteristics were determined. It was concluded that the use of Hewitt's and Hoagland's nutrient solution formulations led to increased growth of nursery fig trees in high-tunnel and open-field conditions, respectively.     

Analysis of genetic diversity in Turkish sesame (Sesamum indicum L.) populations using RAPD markers⋆

The genetic diversity of 38 cultivated populations of Sesamum indicum L. from four different regions of Turkey was estimated at the DNA level with the random amplified polymorphic DNA (RAPD) technique. Sixty-one bands were obtained for all populations 78% of which were polymorphic. Analysis of molecular variance (AMOVA) was used to investigate the genetic diversity of the populations which yielded highly significant differences among populations within regions (91.9% of the total genetic diversity). According to AMOVA and Shannon's index that were performed separately for each region, the highest value of genetic variation was observed among Northwest region populations (CV = 7.7; H₀ = 0.304) and lowest in the Southeast regions' populations (CV = 2.6; H₀ = 0.068). Nei and Li's similarity index was calculated and phylogenetic tree was established using the neighbor-joining algorithm. This phenetic analysis grouped 35 of 38 accessions in six groups leaving three highly diverse accessions outside. Wagner phylogenetic method was used to assess the phylogenetic relationships among the populations. In the majority-rule consensus tree, only 7 of the 32 forks showed above 60% occurrence. Using Principal Coordinate Analysis (PCO) of the RAPD data set, the groups were clearly separated along the first three axis. These results indicate that RAPD technique is useful for sesame systematics, and should be valuable for the maintenance of germplasm banks and the efficient choice of parents in breeding programs.     

Acute toxicity of diazinon on the common carp (Cyprinus carpio L.) embryos and larvae

In the present study, the toxic effects on the embryos and larvae of the common carp were used as a model to investigate the organophosphorus pesticide, diazinon, which contaminates aquatic ecosystems. Data obtained from the diazinon acute toxicity tests were evaluated using the Probit Analysis Statistical Method. The control and six test experiments were repeated five times. The number of dead embryos significantly increased in response to diazinon concentrations 0.25, 0.5, 1, 2, 4, and 8 mg L⁻¹ (p < 0.05 for each case). The 48 h LC₅₀ value (with 95% confidence limits) of diazinon for common carp embryos was estimated at 0.999 (0.698-1.427) mg L⁻¹. Dose-response decreases in hatching success were recorded as 84.60, 75.2, 54.1, 31.0, 6.0, and 0.0%, respectively (p < 0.05). The number of dead larvae significantly increased with increasing diazinon concentrations exposed for 24-96 h (p < 0.05). The 24, 48, 72, and 96 h LC₅₀ values (with 95% confidence limits) of diazinon for common carp larvae were estimated at 3.688 (2.464-8.495), 2.903 (2.019-5.433), 2.358 (1.672-4.005), and 1.530 (1.009-3.948) mg L⁻¹, respectively. There were significant differences in the LC₅₀ values obtained at different exposure times (p < 0.05). The results of the study suggest that low levels (0.25 mg L⁻¹) of diazinon in the aquatic environment may have a significant effect on the reproduction and development of carp.